Journal of Agricultural Science and Technology ›› 2022, Vol. 24 ›› Issue (4): 63-74.DOI: 10.13304/j.nykjdb.2021.0926
• BIOTECHNOLOGY & LIFE SCIENCE • Previous Articles Next Articles
Meili LI1(), Junji SU1, Yonglin YANG2, Jianghong QIN2, Xianxian LI1, Delong YANG1(
), Qi MA3(
), Caixiang WANG1(
)
Received:
2021-11-02
Accepted:
2021-12-09
Online:
2022-04-15
Published:
2022-04-19
Contact:
Delong YANG,Qi MA,Caixiang WANG
李美丽1(), 宿俊吉1, 杨永林2, 秦江鸿2, 李鲜鲜1, 杨德龙1(
), 马麒3(
), 王彩香1(
)
通讯作者:
杨德龙,马麒,王彩香
作者简介:
李美丽 E-mail: 2538268277@qq.com
基金资助:
CLC Number:
Meili LI, Junji SU, Yonglin YANG, Jianghong QIN, Xianxian LI, Delong YANG, Qi MA, Caixiang WANG. Identification of COI Family Genes and Their Expression in Gossypium hirsutum L. Under Drought and Salt Stress[J]. Journal of Agricultural Science and Technology, 2022, 24(4): 63-74.
李美丽, 宿俊吉, 杨永林, 秦江鸿, 李鲜鲜, 杨德龙, 马麒, 王彩香. 陆地棉COI家族基因鉴定及在干旱和盐胁迫下的表达分析[J]. 中国农业科技导报, 2022, 24(4): 63-74.
引物名称 Primer name | 正向引物 Forward primer(5’-3’) | 反向引物 Reverse primer (5’-3’) |
---|---|---|
GhCOI1⁃D01 | GTGACTTGACCGATGCAGGA | GAAAGCGCAAGAACCACAGG |
GhCOI1⁃D06 | CTCGTTTCGATGCTGTCACG | CGAGTCAAATTCCGGCAACG |
GhCOI3⁃D04 | CAACCCGGTATGTCCGATGT | CACCGCCTGCAAACTAGAGA |
GhCOI3⁃A05 | CAACCCGGTATGTCCGATGT | CACCGCCTGCAAACTAGAGA |
GhCOI5⁃A05 | CAGCTCTGCGTTCTGGTTTG | AGCAATCTCCTGGCAACCAT |
GhCOI5⁃A06 | TGGCGGAGCAAATGTCTGAT | ACTCGGAATGACCCGAAACC |
GhCOI7⁃A07 | CCGGCGACAGTAACAAAGGA | GGACATCCAAAGGGATCGCA |
GhCOI9⁃D08 | AGCTCGTAAGCCAGTTTCCC | CCTCAACGGCCAACAATTCG |
GhCOI10⁃A09 | TCAAGTTCCTCGCTCAACGG | TCATCTCTGCGACGCCTTTT |
GhCOI10⁃D09 | TTTGGCAACTGAGTGTGGGA | GCCTCCAGTGATTTGTCGGT |
GhActin | ATCCTCCGTCTTGACCTTG | TGTCCGTCAGGCAACTCAT |
Table 1 Primer sequence for qRT?PCR
引物名称 Primer name | 正向引物 Forward primer(5’-3’) | 反向引物 Reverse primer (5’-3’) |
---|---|---|
GhCOI1⁃D01 | GTGACTTGACCGATGCAGGA | GAAAGCGCAAGAACCACAGG |
GhCOI1⁃D06 | CTCGTTTCGATGCTGTCACG | CGAGTCAAATTCCGGCAACG |
GhCOI3⁃D04 | CAACCCGGTATGTCCGATGT | CACCGCCTGCAAACTAGAGA |
GhCOI3⁃A05 | CAACCCGGTATGTCCGATGT | CACCGCCTGCAAACTAGAGA |
GhCOI5⁃A05 | CAGCTCTGCGTTCTGGTTTG | AGCAATCTCCTGGCAACCAT |
GhCOI5⁃A06 | TGGCGGAGCAAATGTCTGAT | ACTCGGAATGACCCGAAACC |
GhCOI7⁃A07 | CCGGCGACAGTAACAAAGGA | GGACATCCAAAGGGATCGCA |
GhCOI9⁃D08 | AGCTCGTAAGCCAGTTTCCC | CCTCAACGGCCAACAATTCG |
GhCOI10⁃A09 | TCAAGTTCCTCGCTCAACGG | TCATCTCTGCGACGCCTTTT |
GhCOI10⁃D09 | TTTGGCAACTGAGTGTGGGA | GCCTCCAGTGATTTGTCGGT |
GhActin | ATCCTCCGTCTTGACCTTG | TGTCCGTCAGGCAACTCAT |
基因名称 Gene name | 基因编号 Gene ID | 氨基酸数目 Number of amino acids/aa | 分子量 Molecular weight/kD | 等电点pI | 亚细胞定位 Subcellular localization |
---|---|---|---|---|---|
GhCOI1⁃A01 | GH_A01G1190 | 534 | 57.36 | 8.7 | 叶绿体、细胞核Chloroplast, nucleus |
GhCOI1⁃D01 | GH_D01G1258 | 534 | 57.54 | 8.82 | 细胞核Nucleus |
GhCOI1⁃A05 | GH_A05G2065 | 534 | 57.38 | 8.86 | 细胞核Nucleus |
GhCOI1⁃D05 | GH_D05G2095 | 535 | 57.44 | 8.83 | 细胞核Nucleus |
GhCOI1⁃A06 | GH_A06G0210 | 528 | 56.82 | 8.74 | 叶绿体、线粒体Chloroplast, mitochondria |
GhCOI1⁃D06 | GH_D06G0195 | 528 | 56.7 | 8.86 | 叶绿体、线粒体Chloroplast, mitochondria |
GhCOI2⁃A02 | GH_A02G1803 | 544 | 58.97 | 8.49 | 细胞核Nucleus |
GhCOI2⁃D03 | GH_D03G0256 | 514 | 55.87 | 7.87 | 细胞质Cytoplasm |
GhCOI2⁃A10 | GH_A10G0913 | 545 | 59.31 | 8.6 | 细胞质Cytoplasm |
GhCOI2⁃D10 | GH_D10G1048 | 545 | 59.21 | 8.59 | 细胞质Cytoplasm |
GhCOI3⁃D04 | GH_D04G0696 | 591 | 66.99 | 5.98 | 细胞质Cytoplasm |
GhCOI3⁃A05 | GH_A05G3439 | 589 | 66.74 | 5.81 | 细胞质Cytoplasm |
GhCOI4⁃A05 | GH_A05G0481 | 362 | 39.99 | 6.32 | 细胞质Cytoplasm |
GhCOI4⁃D05 | GH_D05G0480 | 362 | 40.08 | 6.96 | 细胞质Cytoplasm |
GhCOI5⁃A05 | GH_A05G2217 | 611 | 68.38 | 5.97 | 细胞核Nucleus |
GhCOI5⁃D05 | GH_D05G2242 | 611 | 68.32 | 5.88 | 叶绿体Chloroplast |
GhCOI5⁃A06 | GH_A06G0343 | 615 | 69.03 | 5.67 | 细胞核Nucleus |
GhCOI5⁃D06 | GH_D06G0328 | 615 | 69.11 | 5.54 | 细胞核Nucleus |
GhCOI6⁃A06 | GH_A06G1509 | 701 | 78.94 | 6.57 | 叶绿体 Chloroplast |
GhCOI6⁃D06 | GH_D06G1549 | 428 | 47.46 | 8.17 | 细胞质Cytoplasm |
GhCOI6⁃A10 | GH_A10G0382 | 650 | 72.69 | 6.75 | 叶绿体Chloroplast |
GhCOI6⁃D10 | GH_D10G0398 | 650 | 72.59 | 6.75 | 细胞核Nucleus |
GhCOI6⁃A12 | GH_A12G1052 | 702 | 79.13 | 5.83 | 细胞核Nucleus |
GhCOI6⁃D12 | GH_D12G1027 | 702 | 79.06 | 5.95 | 细胞核Nucleus |
GhCOI7⁃A07 | GH_A07G2611 | 579 | 65.23 | 7.93 | 细胞质、细胞核Cytoplasm, nucleus |
GhCOI7⁃D07 | GH_D07G2552 | 572 | 64.35 | 8.23 | 细胞核Nucleus |
Table 2 Characteristics and subcellular localization prediction of GhCOI genes
基因名称 Gene name | 基因编号 Gene ID | 氨基酸数目 Number of amino acids/aa | 分子量 Molecular weight/kD | 等电点pI | 亚细胞定位 Subcellular localization |
---|---|---|---|---|---|
GhCOI1⁃A01 | GH_A01G1190 | 534 | 57.36 | 8.7 | 叶绿体、细胞核Chloroplast, nucleus |
GhCOI1⁃D01 | GH_D01G1258 | 534 | 57.54 | 8.82 | 细胞核Nucleus |
GhCOI1⁃A05 | GH_A05G2065 | 534 | 57.38 | 8.86 | 细胞核Nucleus |
GhCOI1⁃D05 | GH_D05G2095 | 535 | 57.44 | 8.83 | 细胞核Nucleus |
GhCOI1⁃A06 | GH_A06G0210 | 528 | 56.82 | 8.74 | 叶绿体、线粒体Chloroplast, mitochondria |
GhCOI1⁃D06 | GH_D06G0195 | 528 | 56.7 | 8.86 | 叶绿体、线粒体Chloroplast, mitochondria |
GhCOI2⁃A02 | GH_A02G1803 | 544 | 58.97 | 8.49 | 细胞核Nucleus |
GhCOI2⁃D03 | GH_D03G0256 | 514 | 55.87 | 7.87 | 细胞质Cytoplasm |
GhCOI2⁃A10 | GH_A10G0913 | 545 | 59.31 | 8.6 | 细胞质Cytoplasm |
GhCOI2⁃D10 | GH_D10G1048 | 545 | 59.21 | 8.59 | 细胞质Cytoplasm |
GhCOI3⁃D04 | GH_D04G0696 | 591 | 66.99 | 5.98 | 细胞质Cytoplasm |
GhCOI3⁃A05 | GH_A05G3439 | 589 | 66.74 | 5.81 | 细胞质Cytoplasm |
GhCOI4⁃A05 | GH_A05G0481 | 362 | 39.99 | 6.32 | 细胞质Cytoplasm |
GhCOI4⁃D05 | GH_D05G0480 | 362 | 40.08 | 6.96 | 细胞质Cytoplasm |
GhCOI5⁃A05 | GH_A05G2217 | 611 | 68.38 | 5.97 | 细胞核Nucleus |
GhCOI5⁃D05 | GH_D05G2242 | 611 | 68.32 | 5.88 | 叶绿体Chloroplast |
GhCOI5⁃A06 | GH_A06G0343 | 615 | 69.03 | 5.67 | 细胞核Nucleus |
GhCOI5⁃D06 | GH_D06G0328 | 615 | 69.11 | 5.54 | 细胞核Nucleus |
GhCOI6⁃A06 | GH_A06G1509 | 701 | 78.94 | 6.57 | 叶绿体 Chloroplast |
GhCOI6⁃D06 | GH_D06G1549 | 428 | 47.46 | 8.17 | 细胞质Cytoplasm |
GhCOI6⁃A10 | GH_A10G0382 | 650 | 72.69 | 6.75 | 叶绿体Chloroplast |
GhCOI6⁃D10 | GH_D10G0398 | 650 | 72.59 | 6.75 | 细胞核Nucleus |
GhCOI6⁃A12 | GH_A12G1052 | 702 | 79.13 | 5.83 | 细胞核Nucleus |
GhCOI6⁃D12 | GH_D12G1027 | 702 | 79.06 | 5.95 | 细胞核Nucleus |
GhCOI7⁃A07 | GH_A07G2611 | 579 | 65.23 | 7.93 | 细胞质、细胞核Cytoplasm, nucleus |
GhCOI7⁃D07 | GH_D07G2552 | 572 | 64.35 | 8.23 | 细胞核Nucleus |
基因名称 Gene name | 基因编号 Gene ID | 氨基酸数目 Number of amino acids/aa | 分子量 Molecular weight/kD | 等电点pI | 亚细胞定位 Subcellular localization |
---|---|---|---|---|---|
GhCOI7⁃A11 | GH_A11G0655 | 572 | 64.46 | 7.42 | 细胞核Nucleus |
GhCOI7⁃D11 | GH_D11G0684 | 572 | 64.28 | 8.2 | 细胞核Nucleus |
GhCOI8A⁃A08 | GH_A08G0483 | 587 | 65.9 | 5.8 | 细胞核Nucleus |
GhCOI8B⁃A08 | GH_A08G0792 | 586 | 65.92 | 6.13 | 细胞核Nucleus |
GhCOI8C⁃A08 | GH_A08G1389 | 586 | 65.62 | 5.5 | 叶绿体、细胞质Chloroplast, cytoplasm |
GhCOI8A⁃D08 | GH_D08G0497 | 587 | 65.67 | 5.61 | 细胞核Nucleus |
GhCOI8B⁃D08 | GH_D08G0784 | 586 | 65.91 | 5.97 | 细胞质Cytoplasm |
GhCOI8C⁃D08 | GH_D08G1411 | 586 | 65.57 | 5.51 | 叶绿体Chloroplast |
GhCOI8⁃A11 | GH_A11G1227 | 585 | 65.64 | 6.54 | 细胞质Cytoplasm |
GhCOI8⁃D11 | GH_D11G1257 | 585 | 65.49 | 5.76 | 细胞质、细胞核Cytoplasm, nucleus |
GhCOI9⁃A08 | GH_A08G2517 | 467 | 52.62 | 7.74 | 细胞核Nucleus |
GhCOI9⁃D08 | GH_D08G2524 | 467 | 52.6 | 6.91 | 细胞质Cytoplasm |
GhCOI9A⁃A11 | GH_A11G1519 | 395 | 43.46 | 6.63 | 细胞质Cytoplasm |
GhCOI9B⁃A11 | GH_A11G3019 | 654 | 72.04 | 8.25 | 叶绿体、细胞核、细胞质Chloroplast, nucleus, cytoplasm |
GhCOI9A⁃D11 | GH_D11G1550 | 395 | 43.43 | 6.98 | 细胞质Cytoplasm |
GhCOI9B⁃D11 | GH_D11G3049 | 654 | 72.27 | 8.17 | 细胞核Nucleus |
GhCOI10⁃A09 | GH_A09G2525 | 592 | 64.35 | 7.91 | 细胞质Cytoplasm |
GhCOI10⁃D09 | GH_D09G2461 | 607 | 65.93 | 8.11 | 细胞质Cytoplasm |
GhCOI10⁃A12 | GH_A12G1492 | 411 | 44.68 | 5.8 | 细胞质、细胞核Cytoplasm, nucleus |
GhCOI10⁃D12 | GH_D12G1505 | 411 | 44.61 | 5.95 | 细胞质、细胞核Cytoplasm, nucleus |
GhCOI11⁃A10 | GH_A10G0227 | 586 | 65.71 | 5.97 | 细胞核Nucleus |
GhCOI11⁃D10 | GH_D10G0239 | 586 | 65.87 | 5.92 | 细胞核Nucleus |
Table 2 Characteristics and subcellular localization prediction of GhCOI genes
基因名称 Gene name | 基因编号 Gene ID | 氨基酸数目 Number of amino acids/aa | 分子量 Molecular weight/kD | 等电点pI | 亚细胞定位 Subcellular localization |
---|---|---|---|---|---|
GhCOI7⁃A11 | GH_A11G0655 | 572 | 64.46 | 7.42 | 细胞核Nucleus |
GhCOI7⁃D11 | GH_D11G0684 | 572 | 64.28 | 8.2 | 细胞核Nucleus |
GhCOI8A⁃A08 | GH_A08G0483 | 587 | 65.9 | 5.8 | 细胞核Nucleus |
GhCOI8B⁃A08 | GH_A08G0792 | 586 | 65.92 | 6.13 | 细胞核Nucleus |
GhCOI8C⁃A08 | GH_A08G1389 | 586 | 65.62 | 5.5 | 叶绿体、细胞质Chloroplast, cytoplasm |
GhCOI8A⁃D08 | GH_D08G0497 | 587 | 65.67 | 5.61 | 细胞核Nucleus |
GhCOI8B⁃D08 | GH_D08G0784 | 586 | 65.91 | 5.97 | 细胞质Cytoplasm |
GhCOI8C⁃D08 | GH_D08G1411 | 586 | 65.57 | 5.51 | 叶绿体Chloroplast |
GhCOI8⁃A11 | GH_A11G1227 | 585 | 65.64 | 6.54 | 细胞质Cytoplasm |
GhCOI8⁃D11 | GH_D11G1257 | 585 | 65.49 | 5.76 | 细胞质、细胞核Cytoplasm, nucleus |
GhCOI9⁃A08 | GH_A08G2517 | 467 | 52.62 | 7.74 | 细胞核Nucleus |
GhCOI9⁃D08 | GH_D08G2524 | 467 | 52.6 | 6.91 | 细胞质Cytoplasm |
GhCOI9A⁃A11 | GH_A11G1519 | 395 | 43.46 | 6.63 | 细胞质Cytoplasm |
GhCOI9B⁃A11 | GH_A11G3019 | 654 | 72.04 | 8.25 | 叶绿体、细胞核、细胞质Chloroplast, nucleus, cytoplasm |
GhCOI9A⁃D11 | GH_D11G1550 | 395 | 43.43 | 6.98 | 细胞质Cytoplasm |
GhCOI9B⁃D11 | GH_D11G3049 | 654 | 72.27 | 8.17 | 细胞核Nucleus |
GhCOI10⁃A09 | GH_A09G2525 | 592 | 64.35 | 7.91 | 细胞质Cytoplasm |
GhCOI10⁃D09 | GH_D09G2461 | 607 | 65.93 | 8.11 | 细胞质Cytoplasm |
GhCOI10⁃A12 | GH_A12G1492 | 411 | 44.68 | 5.8 | 细胞质、细胞核Cytoplasm, nucleus |
GhCOI10⁃D12 | GH_D12G1505 | 411 | 44.61 | 5.95 | 细胞质、细胞核Cytoplasm, nucleus |
GhCOI11⁃A10 | GH_A10G0227 | 586 | 65.71 | 5.97 | 细胞核Nucleus |
GhCOI11⁃D10 | GH_D10G0239 | 586 | 65.87 | 5.92 | 细胞核Nucleus |
Fig.2 Phylogeny analysis of COI genesNote: Gb represents Gossypium barbadense, Gh represents Gossypium hirsutum, Ga represents Gossypium arboreum, Gorai represents Gossypium raimondii, and At represents Arabidopsis thaliana.
Fig.5 cis?acting elements and expression analysis of GhCOI genesA: ,cis-acting elements of GhCOIs promoter; B: Expression analysis of GhCOIs under NaCl and PEG stress; C: Expression analysis of GhCOIs under cold and high-temperature stress
Fig. 6 Expression analysis of 9 GhCOIs under NaCl and PEG stressA: Expression analysis of 9 GhCOIs under NaCl stress; B: Expression analysis of 9 GhCOIs under PEG stress
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