Journal of Agricultural Science and Technology ›› 2019, Vol. 21 ›› Issue (7): 161-169.DOI: 10.13304/j.nykjdb.2019.0094

Previous Articles    

Large-scale DNA Extraction and Optimization of Detection System for Wheat Seeds

ZHANG Mingming1,2§, LIU Lihua2§, ZHAO Jianzong3, ZHANG Like3, LIU Yangna2, LI Hongbo2, ZHANG Fengting2, YAO Ji4, PANG Binshuang2*, ZHAO Changping2*   

  1. (1.Plant Science and Technology College, Beijing University of Agriculture, Beijing 102206; 2.Municipal Key Laboratory of the Molecular Genetics of Hybrid Wheat, Beijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097; 3.National Agricultural Technology Extension and Service Center, Beijing 100088; 4.Syngenta Biotechnology (China) Co., Ltd., Beijing 102206, China
  • Received:2019-02-16 Online:2019-07-15 Published:2019-03-28

小麦种子规模化DNA提取及检测体系的优化

张明明1,2§,刘丽华2§,赵建宗3,张力科3,刘阳娜2,李宏博2,张风廷2,姚骥4,庞斌双2*,赵昌平2*   

  1. 1.北京农学院植物科学技术学院, 北京 102206; 2.北京市农林科学院北京杂交小麦工程技术研究中心, 杂交小麦分子遗传北京市重点实验室, 北京 100097; 3.全国农业技术推广服务中心, 北京 100088; 4.先正达生物科技(中国)有限公司, 北京 102206
  • 通讯作者: 国家重点研发计划项目(2017YFD0102003);北京市农林科学院科技创新能力建设专项(KJCX20161502;KJCX20170422);北京市农林科学院青年基金项目(QNJJ201715);国家现代农业产业技术体系项目(CARS-03-4)资助。
  • 作者简介:§张明明与刘丽华为共同第一作者。张明明,硕士研究生,主要从事小麦品种鉴定技术研究。E-mail:minn_zhang@126.com;刘丽华,副研究员,硕士,主要从事小麦分子育种及品种鉴定技术研究。E-mail:llh216@163.com。
  • 基金资助:
    国家重点研发计划项目(2017YFD0102003);北京市农林科学院科技创新能力建设专项(KJCX20161502;KJCX20170422);北京市农林科学院青年基金项目(QNJJ201715);国家现代农业产业技术体系项目(CARS-03-4)资助。

Abstract: Based on the industry standard of wheat authenticity SSR (NY/T 2859-2015), this study developed a rapid and large-scale DNA extraction method for wheat seeds, and optimized the content of components in the reaction system toprovide technical support for rapid enforcement of wheat authenticity law. By comparing the DNA quality, concentration and PCR amplification effect that extracted by five methods such as SDS, CTAB, high-salt low-pH, rapid extraction and kit, it was found that the improved method of the high-salt low-pH could meet the demand of 42 SSR primers for repeated identification in wheat authenticity identification. It was the better method for 96-well deep-hole plate and automated liquid transfer station. The results of further optimization showed that the concentration of this method at room temperature was 25% higher than that at at 65℃, but the quality and concentration of DNA extracted at both temperatures could meet the requirements of variety identification. The highest concentration of DNA was obtained with 0.5-fold volume of precooled isopropanol, and with 0.6-fold volume of isopropanol at room temperature. The optimal primer concentration and template concentration of 42 pairs of primers in the standard were optimized. The results showed that when the reaction system was 20 μL, the final primer concentration was 0.437 5 μmol/L, and the final template concentration was 10 ng/μL, the amplification efficiency was relatively high, and the amplification products were stable, which could meet the needs of multiple electrophoresis.

Key words: wheat, seed, DNA extraction, high-salt low-pH, PCR reaction system, optimization

摘要: 以小麦种子分子检测农业行业标准(NY/T 2859-2015)为基础,开发小麦种子快速、规模化提取DNA方法,优化反应体系中各组分含量,为小麦真实性快速执法提供技术支撑。通过对SDS、CTAB、高盐低pH、快速提取和试剂盒5种方法提取的DNA质量、浓度和PCR扩增效果进行比较,发现改进的高盐低pH方法提取种子的DNA质量、浓度能够满足小麦真实性鉴定中42对SSR引物重复鉴定的需求,是利用96孔深孔板和自动化移液工作站规模化、高通量提取DNA的较优方法。进一步优化结果显示该方法在65℃温浴条件下比室温的浓度高出25%,但两种温度条件下提取的DNA质量及浓度均能够满足品种鉴定的需求;沉淀时用0.5倍提取液体积的预冷异丙醇沉淀浓度最高,用室温的异丙醇沉淀的最佳体积是提取液体积的0.6倍。对标准中42对引物的最佳引物浓度和模板浓度均进行了优化,综合所有42对引物的优化结果发现,反应体系为20 μL时,引物终浓度为0.437 5 μmol/L,模板终浓度为10 ng/μL时扩增效率相对较高,扩增产物稳定,能够满足多重电泳的需求。

关键词: 小麦, 种子, DNA 提取, 高盐低pH, PCR反应体系, 优化