Research Progress of Histone Modification in Rice

doi:10.13304/j.nykjdb.2021.0497

Abstract

Abstract:

As an important type of epigenetics， histone modification plays an important role in maintaining eukaryotic genome stability， gene expression regulation， and chromatin structure. Rice is an important food crop and a model plant for scientific research. Recent studies have found that histone modifications involved in the regulation of many important biological phenomena in rice， including growth and development， stress response， yield and quality formation. Therefore， clarifying the genetic and regulatory mechanisms of histone modifications in rice is of great significance to the genetic improvement of rice. In this paper， the mechanism of histone modification and the research progress in rice were reviewed， and the research prospects of histone modification in rice were further prospected， which can provide reference of rice breeding.

Key words: histone modification, gene expression, biology, rice

摘要：

作为表观遗传学研究的重要内容，组蛋白修饰在维持真核生物基因组稳定性、基因表达调控和染色质结构等方面发挥重要作用。水稻是重要的粮食作物，也是科学研究的模式植物。近年来研究发现，组蛋白修饰参与了水稻生长发育、胁迫应答、产量以及品质形成等重要生物学性状的调控。因此，明确组蛋白修饰在水稻中的遗传和调控机制对于水稻遗传改良具有重要意义。对组蛋白修饰的作用机制以及在水稻中的研究进展进行了综述，并进一步展望了水稻中组蛋白修饰的研究前景，以期为水稻育种提供参考。

关键词: 组蛋白修饰, 基因表达, 生物学, 水稻

CLC Number:

S511

Tao YANG, Xiaoqian MA, Quan ZHANG, Hongliang ZHANG. Research Progress of Histone Modification in Rice[J]. Journal of Agricultural Science and Technology, 2022, 24(4): 11-20.

杨涛, 马小倩, 张全, 张洪亮. 组蛋白修饰在水稻中的研究进展[J]. 中国农业科技导报, 2022, 24(4): 11-20.

Figures/Tables 2

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组蛋白修饰类型 Histone modification type		基因 Gene	功能分析 Functional analysis	参考文献Reference
甲基化 Methylation	H3K4甲基化酶 H3K4 methylase	SDG701	孢子体生长发育，育性，开花 Spore growth and development， fertility， flowering	［38］
	H3K4甲基化酶 H3K4 methylase	SDG721，SDG705	GA信号，株高，细胞长度，穗分支 GA signal， plant height， cell length， panicle branch	［39］
	H3K4去甲基化酶 H3K4 demethylase	JMJ703	茎秆，株高，粒型，叶角 Stem， plant height， grain type， leaf angle	［40-41］
	H3K9甲基化酶 H3K9 methylase	SDG714	基因组稳定性，毛状体发育 Genome stability， trichome development	［42］
		SDG710，SDG727	抑制逆转座子的转座 Inhibition of transposition of retrotransposons	［43-44］
		SDG723	抽穗期 Heading date	［45］
	H3K9去甲基化酶 H3K9 demethylase	JMJ706	花器官发育Floral organ development	［46］
	H3K9去甲基化酶 H3K9 demethylase	JMJ704	细菌枯萎病抗性Bacterial fusarium wilt resistance	［47］
	H3K27甲基化酶 H3K27 methylase	SDG711	花序形状，抽穗期Inflorescence shape， heading date	［43，48-49］
	H3K27去甲基化酶 H3K27 demethylase	JMJ705	抗病性，茉莉酸信号Disease resistance， Jasmonic acid signal	［50］
	H3K36甲基化酶 H3K36 methylase	SDG708	抗旱性，抽穗期Drought resistance， heading date	［51-52］
		SDG724	光周期，抽穗期Photoperiod， heading date	［53］
		SDG725	抽穗期Heading date	［54］
乙酰化 Acetylation	乙酰化酶 Acetylase	HAT1	粒重，产量Grain weight， yield	［55］
		GCN5	不定根，节间发育Adventitious roots， internode development	［56］
		HDA704	株高，旗叶Plant height， flag leaf	［57］
		HDA710	耐盐性，种子萌发，根生长Salt tolerance， seed germination， root growth	［58-59］
		HDA716	种子萌发，根生长Seed germination， root growth	［58］
		HDT702	叶片和茎发育Leaf and stem development	［57］
		SRT1	氧化胁迫，细胞生长，胚乳发育Oxidative stress， cell growth， endosperm development	［60-61］
		HDT1	抗病性，抽穗期，耐盐性Disease resistance， heading stage， salt tolerance	［62］
		HDAC10	株高，结实率，耐盐性，发芽率Plant height， seed setting rate， salt tolerance， germination rate	［63］
	去乙酰化酶 Deacetylase	HDA705	非生物胁迫，株高，结实率，发芽率Abiotic stress， plant height， seed setting rate， germination rate	［64-65］
		HDAC1	根长度Root length	［66］
		HDAC2	抽穗期Heading date	［67］
		HDA703	花序梗伸长，育性，抽穗期 Peduncle elongated， fertility，heading date	［68］
单泛素化 Mononbiguitination	单泛素化酶 Monoubiquitinase	HUB1，HUB2	株高，分蘖数，育性Plant height， tiller number， fertility	［69］

组蛋白修饰类型 Histone modification type		基因 Gene	功能分析 Functional analysis	参考文献Reference
甲基化 Methylation	H3K4甲基化酶 H3K4 methylase	SDG701	孢子体生长发育，育性，开花 Spore growth and development， fertility， flowering	［38］
	H3K4甲基化酶 H3K4 methylase	SDG721，SDG705	GA信号，株高，细胞长度，穗分支 GA signal， plant height， cell length， panicle branch	［39］
	H3K4去甲基化酶 H3K4 demethylase	JMJ703	茎秆，株高，粒型，叶角 Stem， plant height， grain type， leaf angle	［40-41］
	H3K9甲基化酶 H3K9 methylase	SDG714	基因组稳定性，毛状体发育 Genome stability， trichome development	［42］
		SDG710，SDG727	抑制逆转座子的转座 Inhibition of transposition of retrotransposons	［43-44］
		SDG723	抽穗期 Heading date	［45］
	H3K9去甲基化酶 H3K9 demethylase	JMJ706	花器官发育Floral organ development	［46］
	H3K9去甲基化酶 H3K9 demethylase	JMJ704	细菌枯萎病抗性Bacterial fusarium wilt resistance	［47］
	H3K27甲基化酶 H3K27 methylase	SDG711	花序形状，抽穗期Inflorescence shape， heading date	［43，48-49］
	H3K27去甲基化酶 H3K27 demethylase	JMJ705	抗病性，茉莉酸信号Disease resistance， Jasmonic acid signal	［50］
	H3K36甲基化酶 H3K36 methylase	SDG708	抗旱性，抽穗期Drought resistance， heading date	［51-52］
		SDG724	光周期，抽穗期Photoperiod， heading date	［53］
		SDG725	抽穗期Heading date	［54］
乙酰化 Acetylation	乙酰化酶 Acetylase	HAT1	粒重，产量Grain weight， yield	［55］
		GCN5	不定根，节间发育Adventitious roots， internode development	［56］
		HDA704	株高，旗叶Plant height， flag leaf	［57］
		HDA710	耐盐性，种子萌发，根生长Salt tolerance， seed germination， root growth	［58-59］
		HDA716	种子萌发，根生长Seed germination， root growth	［58］
		HDT702	叶片和茎发育Leaf and stem development	［57］
		SRT1	氧化胁迫，细胞生长，胚乳发育Oxidative stress， cell growth， endosperm development	［60-61］
		HDT1	抗病性，抽穗期，耐盐性Disease resistance， heading stage， salt tolerance	［62］
		HDAC10	株高，结实率，耐盐性，发芽率Plant height， seed setting rate， salt tolerance， germination rate	［63］
	去乙酰化酶 Deacetylase	HDA705	非生物胁迫，株高，结实率，发芽率Abiotic stress， plant height， seed setting rate， germination rate	［64-65］
		HDAC1	根长度Root length	［66］
		HDAC2	抽穗期Heading date	［67］
		HDA703	花序梗伸长，育性，抽穗期 Peduncle elongated， fertility，heading date	［68］
单泛素化 Mononbiguitination	单泛素化酶 Monoubiquitinase	HUB1，HUB2	株高，分蘖数，育性Plant height， tiller number， fertility	［69］

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[3]	Zhenjia HE, Wangtao FAN, Yichun DU, Qilong WANG. Effects of Water and Fertilizer Coupling on the Physical and Chemical Properties of Rice Soil and Yield Based on Soil Organic Reconstruction [J]. Journal of Agricultural Science and Technology, 2022, 24(3): 176-185.
[4]	Wei YAN, Yutao WANG, Yonghao ZHANG, Haixia LIU, Dayong HAN, Aiwen ZHU. Study on Expressions of CNR1 and FABP4 Genes in Ovine Intramuscular Preadipocytes [J]. Journal of Agricultural Science and Technology, 2022, 24(3): 95-102.
[5]	Hui XU, Yangyang ZHAO, Dongyue SUN, Yuanyuan KE, Lele ZHANG, Xiang CHEN, Fengzhen WEI, Jincai LI. Progress in Integrated Rice-crayfish Farming System [J]. Journal of Agricultural Science and Technology, 2022, 24(2): 160-168.
[6]	Xiaoqian MA, Tao YANG, Quan ZHANG, Hongliang ZHANG. Development Status and Prospect of Rice New Breeding Technology [J]. Journal of Agricultural Science and Technology, 2022, 24(1): 24-30.
[7]	Xiaochun SUN, Wenjing HUANG, Bo LI. Effects of Exogenous Salicylic Acid on Physiological and Biochemical Indexes and Related Gene Expression in Platycodongrandiflorus Under Drought Stress [J]. Journal of Agricultural Science and Technology, 2022, 24(1): 63-70.
[8]	XI Min, XU Youzun, SUN Xueyuan, WU Wenge, ZHOU Yongjin. Effects of Nitrogen Fertilizer Topdressing on Grain Filling and Milling Quality of the Rice with High Grain Chalkiness [J]. Journal of Agricultural Science and Technology, 2021, 23(9): 144-151.
[9]	BAI Hao, LI Xiaofan, ZHONG Li, SONG Qianqian, LIU Benshuai, ZHANG Xin, ZHANG Yang, WANG Zhixiu, JIANG Yong, XU Qi, CHANG Guobin, CHEN Guohong, . Mineral Element Depositions and Gene Expression Across Different Tissues of the Runzhou White Crested Ducks [J]. Journal of Agricultural Science and Technology, 2021, 23(8): 63-73.
[10]	WU Zishuai, LI Hu, HUANG Qiuyao, CHEN Chuanhua, LUO Qunchang, ZHOU Xinmin, WU Jiaju, LIU Guanglin. Influences of Nitrogen Fertilizer Application Rate and Planting Density on the Yield and Rice Quality of Guiyu 11 [J]. Journal of Agricultural Science and Technology, 2021, 23(8): 154-162.
[11]	WENG Wenan, CHENG Shuang, LI Shaoping, TIAN Jinyu, TAO Yu, HU Qun, HU Yajie, GUO Baowei, WEI Haiyan, XING Zhipeng, ZHANG Hongcheng. Effects of One-off Nitrogen Basal Fertilization on Yield of Direct Seeding Conventional Japonica Rice Under Different Panicle Formation Types [J]. Journal of Agricultural Science and Technology, 2021, 23(8): 163-172.
[12]	JIANG Xuehai, LUO Deqiang, LI Min, JI Guangmei, JIANG Mingjin, LI Lijiang, Li Ganghua, ZHOU Weijia, ZHANG Jiafeng. Influences of Planting Density on Yield and Nitrogen Use Efficiency in New Indica Hybrid Rice Varieties by Bowl-Seedling-Mechanical-Transplanting [J]. Journal of Agricultural Science and Technology, 2021, 23(8): 173-184.
[13]	ZHOU Xuan, KANG Xingrong, PENG Jianwei, YANG Xiangdong, ZHONG Xuemei, HU Wenfeng, LONG Junyou. Effects of Reduction Application of Polyurethane Coated Urea on Growth, Yield and Economic Benefit of Double-cropping Early Rice [J]. Journal of Agricultural Science and Technology, 2021, 23(7): 153-161.
[14]	LUO Youyi, WANG Weiqin, ZHENG Huabin, LIU Gongyi, CHAO Ying, XU Cai, ZHENG Zhigang, LI Xueqian, WEI Yinlan, TANG Qiyuan. Influences of Different Mechanical and Orderly Planting Methods on Growth Characteristics and Yield of rice [J]. Journal of Agricultural Science and Technology, 2021, 23(7): 162-171.
[15]	LIU Yuan, ZHANG Xiuyan, XU Miaoyun, ZHENG Hongyan, ZOU Junjie, ZHANG Lan, WANG Lei. Global Small RNA Transcriptome Profiling of Rice Under Drought Stress [J]. Journal of Agricultural Science and Technology, 2021, 23(6): 23-32.