With deepening of the revolution of data-intensive research paradigm, how to use information technology to promote the integration of rich agricultural data types and application scenarios, and realize the sustainable development of the agricultural science and technology innovation system has become the primary issue for the development of scientific informatization in agricultural research institutions. In order to promote agricultural scientific research innovation, a framework model for the development of scientific informatization was built under the transformation of data-intensive scientific research paradigm, which included 4 dimensions: basic environment, scientific research big data center, intelligent equipment and new scientific research platform. Based on this framework model, the key construction measures and development directions of scientific informatization for researchers’ data ability improvement and innovation needs was proposed, which would help to improve the ability of scientific informatization for “integrate into the environment and embed in the process” in process of innovation and management, and transform scientific informatization from supporting assistance to leading development in the future.