In order to study the impact of HA gene of H5N1 on the viral antigen distribution, we inserted foreign gene (HA gene of H5N1 highly pathogenic avian influenza virus) between the M gene and P gene based on the F gene being exchanged rLaSota and rLaSota backbone, which were named as rL-F(M)-FHA and rL-FHA. Vaccination was given by eyedrop and intranasally instillation with rL-F(M)-FHA, rL- FHA and rlaSota to 4-day-old SPF chickens, after 1 d, 3 d, 5 d, 10 d, 15 d or 18 d, we collected the trachea, lung, liver, kidney, brain, spleen, proventriculus, duodenum. The distribution of viral antigen in tissues were detected by using immunohistochemical ( IHC ) staining. The results showed that HA gene of H5N1 being inserted rLaSota and F gene being exchanged had great influence to the distribution of viral antigen.